First let me say that I am a huge huge fan of Freesurfer. It makes my life easier in so many ways by 1) creating surfaces that we can display fMRI results on; 2) giving beautiful cortical and subcortical segmentations for use in the upcoming (soon, really) pediatric Atlas that I’ve been working on; 3) […]
Freesurfer Cortical Thickness Analysis with AFNI/SUMA tools
Posted by pete on July 14, 2014
https://blog.cogneurostats.com/2014/07/14/analyzing-freesurfer-surfaces-with-afnisuma-tools/
NEW CogNeuroStats Wiki
Like many of our fellow bloggers, we hear pleas from readers about needing a “start page” to organize everything together. After considerable amounts of thought, we finally had the idea of creating a wiki that would house much of the content that exists on the blog. The one major shift is that we’re going to spend […]
Posted by pete on July 11, 2014
https://blog.cogneurostats.com/2014/07/11/new-cogneurostats-wiki/
Simultaneous t-tests in AFNI’s 3dttest++
In the past I’ve shown how to use 3dttest++ to do one-sample, paired, and two-sample t-tests for whole-brain maps in AFNI. Occasionally there is an instance where you want to quickly generate a series of t-tests for all participants at once. Most people (including me until recently) would simply loop over their gen_group_command.py script several […]
Posted by pete on June 9, 2014
https://blog.cogneurostats.com/2014/06/09/simultaneous-t-tests-in-afnis-3dttest/
AFNI Bootcamp Training Next Week
There is an AFNI training workshop (aka “Bootcamp”) NEXT WEEK at Yale. If you’re interested in signing up, the information is here.
Posted by pete on May 19, 2014
https://blog.cogneurostats.com/2014/05/19/afni-bootcamp-training-next-week/
Brief: Process Resting-State Data Faster with 3dTproject!
I don’t usually post brief updates like this, but a recent update to afni_proc.py has me really excited. As of the May 13th 2014 binaries of AFNI, you can now expect your resting state data to process considerably faster thanks to a new-ish program called 3dTproject. 3dTproject is meant to replace 3dDeconvolve for resting state […]
Posted by pete on May 15, 2014
https://blog.cogneurostats.com/2014/05/15/brief-process-resting-state-data-faster-with-3dtproject/